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Molecular Biology
P.O. Box 9101
6500 HB Nijmegen
T: +31 24 3610524
F: +31 24 3610520


Henk Stunnenberg is full professor and head of the Department of Molecular Biology. He is a member of EMBO.
Prof. Dr. Henk Stunnenberg

Our research aims at unraveling the molecular basis of development and differentiation emanating from the genome and epigenome in the context of health and disease with emphasis on cancer. The major focus is on the regulatory networks in human and mouse as well as Plasmodium falciparum, the causative agent of malaria. State-of-the-art technological developments are applied ranging from single molecule studies through to genome wide elucidation of genetic and epigenetic pathways and mechanisms. A Next Generation ultra high throughput single molecule sequencing platform is operational in the department to analyze transcription factor binding sites, epigenetic marks, MeDIP-seq and MethylCap-seq for DNA-methylation and RNA-seq at a comprehensive genome wide scale. In depths analysis of the genome wide data is performed and sustained by our own bioinformatic team as well as with outside collaborators. The group participates in a number of international consortia tackling pathways and molecular mechanisms in lineage commitment of (embryonic) stem cells and pluripotency (Heroic, PlurySys, Gencodys), nuclear receptor action (TI-Pharma) and cancer (Epitron, CancerDIP, Basis, ICGC). High accuracy mass spectrometric approaches are used to identify and to characterize protein complexes that write, erase and translate epigenetic marks.

 
Recent key publications

Hendrik Marks, Jennifer C. Chow, Sergey Denissov, Kees-Jan Françoijs, Neil Brockdorff, Edith Heard and Henk G. Stunnenberg. High Resolution analysis of epigenetic changes associated with the early events of X inactivation. Genome Res. 2009 Jul 6. [Epub ahead of print]

Salcedo-Amaya AM, van Driel MA, Alako BT, Trelle MB, van den Elzen AM, Cohen AM, Janssen-Megens EM, van de Vegte-Bolmer M, Selzer RR, Iniguez AL, Green RD, Sauerwein RW, Jensen ON, Stunnenberg HG Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum. Proc Natl Acad Sci U S A. 2009 Jun 16;106(24):9655-60. Epub 2009 Jun

Ronni Nielsen, Thomas Åskov Pedersen, Dik Hagenbeek, Panagiotis Moulos, Rasmus Siersbæk, Eva Megens, Michael Børgesen, Kees-Jan Francoijs, Susanne Mandrup* and Hendrik G. Stunnenberg* Genome-wide profiling of PPARγ:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways during adiposeness. Genes Dev. 2008 Nov 1;22(21):2953-2967. Co-corresponding*